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In Preparation · 2026
magprofile: a reproducible toolkit for genome-resolved microbiome ecology from assembly to network inference
Abdul Malek, A.Z. et al.
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In preparation — targeting Bioinformatics (Oxford)
Abstract
magprofile integrates five analytical stages into a single reproducible pipeline: MAG quality filtering, compositional ecology with CLR transformation, functional profiling with PGPR screening, phi-proportionality network inference, and publication-ready visualization. Benchmarked on 633 MAGs across 30 samples in ~105 minutes.